source("http://bioconductor.org/biocLite.R")
biocLite("DNAcopy")

DNAcopy

DNA copy number data analysis

Bioconductor version: 2.13

Segments DNA copy number data using circular binary segmentation to detect regions with abnormal copy number

Author: Venkatraman E. Seshan, Adam Olshen

Maintainer: Venkatraman E. Seshan <seshanv at mskcc.org>

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("DNAcopy")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("DNAcopy")

 

PDF	R Script	DNAcopy
PDF		Reference Manual

Details

biocViews	CopyNumberVariants, Microarray, Software
Version	1.36.0
In Bioconductor since	BioC 1.6 (R-2.1) or earlier
License	GPL (>= 2)
Depends
Imports
Suggests
System Requirements
URL
Depends On Me	CGHcall, cghMCR, Clonality, CNAnorm, CNVrd2, CRImage, MEDIPS, snapCGH, SomatiCA
Imports Me	ADaCGH2, ArrayTV, ChAMP, Clonality, cn.farms, GWASTools, MEDIPS, MinimumDistance, Repitools, snapCGH, SomatiCA
Suggests Me	beadarraySNP, Clonality, cn.mops, fastseg, genoset

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	DNAcopy_1.36.0.tar.gz
Windows Binary	DNAcopy_1.36.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)	DNAcopy_1.36.0.tgz
Browse/checkout source	(username/password: readonly)
Package Downloads Report	Download Stats