source("http://bioconductor.org/biocLite.R")
biocLite("CGHcall")

CGHcall

Calling aberrations for array CGH tumor profiles.

Bioconductor version: 2.13

Calls aberrations for array CGH data using a six state mixture model as well as several biological concepts that are ignored by existing algorithms. Visualization of profiles is also provided.

Author: Mark van de Wiel, Sjoerd Vosse

Maintainer: Mark van de Wiel <mark.vdwiel at vumc.nl>

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("CGHcall")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("CGHcall")

 

PDF	R Script	CGHcall
PDF		Reference Manual

Details

biocViews	Microarray, Preprocessing, Software, Visualization
Version	2.22.0
In Bioconductor since	BioC 2.1 (R-2.6)
License	GPL (http://www.gnu.org/copyleft/gpl.html)
Depends	R (>= 2.0.0), impute(>= 1.8.0), DNAcopy(>= 1.6.0), methods, Biobase, CGHbase(>= 1.15.1), snowfall
Imports
Suggests
System Requirements
URL
Depends On Me	CGHnormaliter
Imports Me	CGHnormaliter
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	CGHcall_2.22.0.tar.gz
Windows Binary	CGHcall_2.22.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)	CGHcall_2.22.0.tgz
Browse/checkout source	(username/password: readonly)
Package Downloads Report	Download Stats