source("http://bioconductor.org/biocLite.R")
biocLite("CRImage")

CRImage

CRImage a package to classify cells and calculate tumour cellularity

Bioconductor version: 2.13

CRImage provides functionality to process and analyze images, in particular to classify cells in biological images. Furthermore, in the context of tumor images, it provides functionality to calculate tumour cellularity.

Author: Henrik Failmezger <failmezger at mpipz.mpg.de>, Yinyin Yuan <Yinyin.Yuan at cancer.org.uk>, Oscar Rueda <oscar.rueda at cancer.org.uk>, Florian Markowetz <Florian.Markowetz at cancer.org.uk>

Maintainer: Henrik Failmezger <failmezger at mpipz.mpg.de>, Yinyin Yuan <Yinyin.Yuan at cancer.org.uk>

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("CRImage")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("CRImage")

 

PDF		cellularity2.pdf
PDF	R Script	CRImage Manual
PDF		labeledImage.pdf
PDF		segmentedImage.pdf
PDF		segmentedImageRaw.pdf
PDF		Reference Manual

Details

biocViews	CellBiology, Classification, Software
Version	1.10.0
In Bioconductor since	BioC 2.7 (R-2.12)
License	Artistic-2.0
Depends	EBImage, DNAcopy, aCGH
Imports	MASS, e1071, foreach, sgeostat
Suggests
System Requirements
URL
Depends On Me
Imports Me
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	CRImage_1.10.0.tar.gz
Windows Binary	CRImage_1.10.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)	CRImage_1.10.0.tgz
Browse/checkout source	(username/password: readonly)
Package Downloads Report	Download Stats