source("http://bioconductor.org/biocLite.R")
biocLite("CNORdt")

CNORdt

Add-on to CellNOptR: Discretized time treatments

Bioconductor version: 2.13

This add-on to the package CellNOptR handles time-course data, as opposed to steady state data in CellNOptR. It scales the simulation step to allow comparison and model fitting for time-course data. Future versions will optimize delays and strengths for each edge.

Author: A. MacNamara

Maintainer: A. MacNamara <aidan.macnamara at ebi.ac.uk>

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("CNORdt")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("CNORdt")

 

PDF		CNORdt-vignette-plot.pdf
PDF	R Script	Using multiple time points to train logic models to data
PDF		Reference Manual

Details

biocViews	Bioinformatics, CellBasedAssays, CellBiology, Proteomics, Software, TimeCourse
Version	1.4.0
In Bioconductor since	BioC 2.11 (R-2.15)
License	GPL-2
Depends	R (>= 1.8.0), CellNOptR(>= 0.99), abind
Imports
Suggests
System Requirements
URL
Depends On Me
Imports Me
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	CNORdt_1.4.0.tar.gz
Windows Binary	CNORdt_1.4.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)	CNORdt_1.4.0.tgz
Browse/checkout source	(username/password: readonly)
Package Downloads Report	Download Stats