KEGGgraph: A graph approach to KEGG PATHWAY in R and Bioconductor

Bioconductor version: Release (2.11)

KEGGGraph is an interface between KEGG pathway and graph object as well as a collection of tools to analyze, dissect and visualize these graphs. It parses the regularly updated KGML (KEGG XML) files into graph models maintaining all essential pathway attributes. The package offers functionalities including parsing, graph operation, visualization and etc.

Author: Jitao David Zhang

Maintainer: Jitao David Zhang <jitao_david.zhang at>

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PDF R Script KEGGgraph: Application Examples
PDF R Script KEGGgraph: graph approach to KEGG PATHWAY
PDF   Reference Manual
Text   NEWS


biocViews GraphsAndNetworks, NetworkVisualization, Pathways, Software
Version 1.14.0
In Bioconductor since BioC 2.4 (R-2.9)
License GPL (>= 2)
Depends R (>= 2.10), methods, XML (>= 2.3-0), graph
Imports methods, XML, graph
Suggests Rgraphviz, RBGL, RUnit, RColorBrewer, KEGG.db,, hgu133plus2.db, SPIA
System Requirements
Depends On Me
Imports Me DEGraph, NCIgraph
Suggests Me DEGraph, SPIA

Package Downloads

Package Source KEGGgraph_1.14.0.tar.gz
Windows Binary (32- & 64-bit)
MacOS 10.5 (Leopard) KEGGgraph_1.14.0.tgz
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