GeneNetworkBuilder

Build Regulatory Network from ChIP-chip/ChIP-seq and Expression Data

Bioconductor version: Release (2.11)

Appliation for discovering direct or indirect targets of transcription factors using ChIP-chip or ChIP-seq, and microarray or RNA-seq gene expression data. Inputting a list of genes of potential targets of one TF from ChIP-chip or ChIP-seq, and the gene expression results, GeneNetworkBuilder generates a regulatory network of the TF.

Author: Jianhong Ou and Lihua Julie Zhu

Maintainer: Jianhong Ou <jianhong.ou at umassmed.edu>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("GeneNetworkBuilder")

To cite this package in a publication, start R and enter:

    citation("GeneNetworkBuilder")

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