GLAD

Gain and Loss Analysis of DNA

Bioconductor version: 2.8

Analysis of array CGH data : detection of breakpoints in genomic profiles and assignment of a status (gain, normal or loss) to each chromosomal regions identified.

Author: Philippe Hupe

Maintainer: Philippe Hupe <glad at curie.fr>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("GLAD")

To cite this package in a publication, start R and enter:

    citation("GLAD")

Documentation

PDF R Script GLAD
PDF   Reference Manual

Details

biocViews Microarray, CopyNumberVariants
Depends R (>= 2.5.0)
Imports
Suggests aws, tcltk
System Requirements gsl. Note: users should have GSL installed. Windows users: 'consult the README file available in the inst directory of the source distribution for necessary configuration instructions'.
License GPL-2
URL http://bioinfo.curie.fr
Depends On Me ITALICS, MANOR
Imports Me ITALICS, MANOR, snapCGH
Suggests Me ADaCGH2
Version 2.14.0
Since Bioconductor 1.6 (R-2.1) or earlier

Package Downloads

Package Source GLAD_2.14.0.tar.gz
Windows Binary GLAD_2.14.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary GLAD_2.14.0.tgz
Package Downloads Report Download Stats

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