affyILM

Linear Model of background subtraction and the Langmuir isotherm

Bioconductor version: 2.8

affyILM is a preprocessing tool which estimates gene expression levels for Affymetrix Gene Chips. Input from physical chemistry is employed to first background subtract intensities before calculating concentrations on behalf of the Langmuir model.

Author: K. Myriam Kroll, Fabrice Berger, Gerard Barkema, Enrico Carlon

Maintainer: Myriam Kroll and Fabrice Berger <affyILM at itf.fys.kuleuven.be>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("affyILM")

To cite this package in a publication, start R and enter:

    citation("affyILM")

Documentation

PDF R Script affyILM0.0.1
PDF   Reference Manual

Details

biocViews Microarray, OneChannel, Preprocessing
Depends R (>= 2.10.0), methods
Imports affxparser(>= 1.16.0), gcrma, affy, graphics, methods
Suggests AffymetrixDataTestFiles
System Requirements Gnu Scientific Library version >= 1.8
License GPL-3
URL
Depends On Me
Imports Me
Suggests Me
Version 1.4.0
Since Bioconductor 2.6 (R-2.11)

Package Downloads

Package Source affyILM_1.4.0.tar.gz
Windows Binary affyILM_1.4.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary affyILM_1.4.0.tgz
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