AffyExpress

Affymetrix Quality Assessment and Analysis Tool

Bioconductor version: 2.8

The purpose of this package is to provide a comprehensive and easy-to-use tool for quality assessment and to identify differentially expressed genes in the Affymetrix gene expression data.

Author: Xiwei Wu <xwu at coh.org>, Xuejun Arthur Li <xueli at coh.org>

Maintainer: Xuejun Arthur Li <xueli at coh.org>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("AffyExpress")

To cite this package in a publication, start R and enter:

    citation("AffyExpress")

Documentation

PDF R Script 1. Primer
PDF   Reference Manual

Details

biocViews Microarray, OneChannel, QualityControl, Preprocessing, Bioinformatics, DifferentialExpression, Annotation, ReportWriting, Visualization
Depends R (>= 2.5.0), affy(>= 1.23.4), limma
Imports
Suggests simpleaffy, R2HTML, affyPLM, hgu95av2cdf, hgu95av2, test3cdf, genefilter, estrogen, annaffy, gcrma
System Requirements
License LGPL
URL
Depends On Me
Imports Me
Suggests Me
Version 1.18.0
Since Bioconductor 2.1 (R-2.6)

Package Downloads

Package Source AffyExpress_1.18.0.tar.gz
Windows Binary AffyExpress_1.18.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary AffyExpress_1.18.0.tgz
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