oneChannelGUI

DOI: 10.18129/B9.bioc.oneChannelGUI    

This package is for version 3.6 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see oneChannelGUI.

A graphical interface designed to facilitate analysis of microarrays and miRNA/RNA-seq data on laptops

Bioconductor version: Release (3.6)

This package was developed to simplify the use of Bioconductor tools for beginners having limited or no experience in writing R code. This library provides a graphical interface for microarray gene and exon level analysis as well as miRNA/mRNA-seq data analysis

Author: Raffale A Calogero, Bioinformatics and Genomics Unit, Molecular Biotechnology Center, Torino (Italy)

Maintainer: Raffaele A Calogero <raffaele.calogero at unito.it>

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("oneChannelGUI")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("oneChannelGUI")

 

PDF	R Script	oneChannelGUI Installation
PDF		oneChannelGUI microarray exon-level data analysis overview
PDF		oneChannelGUI microarray gene-level data analysis overview
PDF		oneChannelGUI miRNA and RNA-seq data analysis overview
PDF		oneChannelGUI Stand Alone Functions
PDF		Reference Manual
Text		NEWS

Details

biocViews	DataImport, DifferentialExpression, GUI, Microarray, MultipleComparison, OneChannel, Preprocessing, QualityControl, RNASeq, Sequencing, Software, StatisticalMethod
Version	1.41.0
In Bioconductor since	BioC 2.0 (R-2.5) (11 years)
License	Artistic-2.0
Depends	Biobase, affylmGUI, tkrplot, tkWidgets, IRanges, Rsamtools(>= 1.13.1), Biostrings, siggenes, chimera
Imports
LinkingTo
Suggests	annotate, genefilter, maSigPro, pamr, pdmclass, ChIPpeakAnno, chipseq, BSgenome, Rgraphviz, affy, annaffy, affyPLM, multtest, ssize, sizepower, RankProd, org.Hs.eg.db, org.Mm.eg.db, org.Rn.eg.db, edgeR, metaArray, MergeMaid, biomaRt, GenomeGraphs, AffyCompatible, rtracklayer, Genominator, EDASeq, limma, DESeq, DEXSeq, goseq, hugene10sttranscriptcluster.db, mogene10sttranscriptcluster.db, ragene10sttranscriptcluster.db, GOstats, AnnotationDbi, preprocessCore, baySeq, HuExExonProbesetLocation, MoExExonProbesetLocation, RaExExonProbesetLocation, snow, RmiR, RmiR.Hs.miRNA, BSgenome.Hsapiens.UCSC.hg19, R.utils, cummeRbund, BSgenome.Mmusculus.UCSC.mm9, BSgenome.Rnorvegicus.UCSC.rn4, DESeq2, GenomicAlignments, BiocParallel, KEGG.db, miRNApath, miRNAtap, miRNAtap.db
SystemRequirements
Enhances
URL	http://www.bioinformatica.unito.it/oneChannelGUI/
Depends On Me
Imports Me
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	oneChannelGUI_1.41.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)	oneChannelGUI_1.43.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/oneChannelGUI
Package Short Url	http://bioconductor.org/packages/oneChannelGUI/
Package Downloads Report	Download Stats