DOI: 10.18129/B9.bioc.miRNAtap    

miRNAtap: microRNA Targets - Aggregated Predictions

Bioconductor version: Release (3.6)

The package facilitates implementation of workflows requiring miRNA predictions, it allows to integrate ranked miRNA target predictions from multiple sources available online and aggregate them with various methods which improves quality of predictions above any of the single sources. Currently predictions are available for Homo sapiens, Mus musculus and Rattus norvegicus (the last one through homology translation).

Author: Maciej Pajak, T. Ian Simpson

Maintainer: Maciej Pajak <m.pajak at sms.ed.ac.uk>

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PDF R Script miRNAtap
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biocViews Classification, Microarray, Sequencing, Software, miRNA
Version 1.12.0
In Bioconductor since BioC 3.0 (R-3.1) (3.5 years)
License GPL-2
Depends R (>= 3.3.0), AnnotationDbi
Imports DBI, RSQLite, stringr, sqldf, plyr, methods
Suggests topGO, org.Hs.eg.db, miRNAtap.db, testthat
Depends On Me miRNAtap.db
Imports Me miRNAtap.db, SpidermiR
Suggests Me oneChannelGUI
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Source Package miRNAtap_1.12.0.tar.gz
Windows Binary miRNAtap_1.12.0.zip
Mac OS X 10.11 (El Capitan) miRNAtap_1.12.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/miRNAtap
Package Short Url http://bioconductor.org/packages/miRNAtap/
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