pdmclass

DOI: 10.18129/B9.bioc.pdmclass    

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

This package is for version 3.6 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see pdmclass.

Classification of Microarray Samples using Penalized Discriminant Methods

Bioconductor version: Release (3.6)

This package can be used to classify microarray data using one of three penalized regression methods; partial least squares, principal components regression, or ridge regression.

Author: James W. MacDonald, Debashis Ghosh, based in part on pls code of Mike Denham

Maintainer: James W. MacDonald <jmacdon at u.washington.edu>

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("pdmclass")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("pdmclass")

 

PDF	R Script	pdmclass Overview
PDF		Reference Manual

Details

biocViews	Classification, Software
Version	1.47.0
In Bioconductor since	BioC 1.7 (R-2.2) (12.5 years)
License	Artistic-2.0
Depends	Biobase(>= 1.4.22), R (>= 1.9.0), fibroEset, mda
Imports
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me	oneChannelGUI
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	pdmclass_1.47.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository	git clone https://git.bioconductor.org/packages/pdmclass
Package Short Url	http://bioconductor.org/packages/pdmclass/
Package Downloads Report	Download Stats