A graphical interface designed to facilitate analysis of microarrays and miRNA/RNA-seq data on laptops.

Bioconductor version: 2.9

This package was developed to simplify the use of Bioconductor tools for beginners having limited or no experience in writing R code. This library provides a graphical interface for microarray gene and exon level analysis as well as miRNA/mRNA-seq data analysis.

Author: Raffale A Calogero, Bioinformatics and Genomics Unit, Molecular Biotechnology Center, Torino (Italy)

Maintainer: Raffaele A Calogero <raffaele.calogero at>

To install this package, start R and enter:


To cite this package in a publication, start R and enter:



PDF fignew42.pdf
PDF R Script oneChannelGUI Installation
PDF R Script oneChannelGUI microarray exon-level data analysis overview
PDF R Script oneChannelGUI microarray gene-level data analysis overview
PDF R Script oneChannelGUI miRNA and RNA-seq data analysis overview
PDF R Script oneChannelGUI Stand Alone Functions
PDF R Script oneChannelGUI What is New
PDF   Reference Manual


biocViews HighThroughputSequencing, RNAseq, Microarray, OneChannel, DataImport, QualityControl, Preprocessing, Statistics, DifferentialExpression, GUI, MultipleComparisons
Depends Biobase, affylmGUI, tkWidgets, IRanges, Rsamtools, Biostrings
Suggests annotate, genefilter, maSigPro, pamr, pdmclass, ChIPpeakAnno, chipseq, BSgenome, Rgraphviz, affy, annaffy, affyPLM, multtest, ssize, sizepower, siggenes, RankProd,,,, edgeR, metaArray, MergeMaid, biomaRt, GenomeGraphs, AffyCompatible, rtracklayer, Genominator, EDASeq, limma, DESeq, goseq, hugene10sttranscriptcluster.db, mogene10sttranscriptcluster.db, ragene10sttranscriptcluster.db, GOstats, AnnotationDbi, preprocessCore, baySeq, HuExExonProbesetLocation, MoExExonProbesetLocation, RaExExonProbesetLocation, snow, RmiR, RmiR.Hs.miRNA, BSgenome.Hsapiens.UCSC.hg19, BSgenome.Mmusculus.UCSC.mm9, BSgenome.Rnorvegicus.UCSC.rn4, R.utils
System Requirements
License The Artistic License, Version 2.0
Depends On Me
Imports Me
Suggests Me
Version 1.20.19
Since Bioconductor 2.0 (R-2.5)

Package Downloads

Package Source oneChannelGUI_1.20.19.tar.gz
Windows Binary (32- & 64-bit)
MacOS 10.5 (Leopard) binary oneChannelGUI_1.20.19.tgz
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