oneChannelGUI

A graphical interface designed to facilitate analysis of microarrays and miRNA/RNA-seq data on laptops.

Bioconductor version: 2.9

This package was developed to simplify the use of Bioconductor tools for beginners having limited or no experience in writing R code. This library provides a graphical interface for microarray gene and exon level analysis as well as miRNA/mRNA-seq data analysis.

Author: Raffale A Calogero, Bioinformatics and Genomics Unit, Molecular Biotechnology Center, Torino (Italy)

Maintainer: Raffaele A Calogero <raffaele.calogero at unito.it>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("oneChannelGUI")

To cite this package in a publication, start R and enter:

    citation("oneChannelGUI")

Documentation

PDF		fignew42.pdf
PDF	R Script	oneChannelGUI Installation
PDF	R Script	oneChannelGUI microarray exon-level data analysis overview
PDF	R Script	oneChannelGUI microarray gene-level data analysis overview
PDF	R Script	oneChannelGUI miRNA and RNA-seq data analysis overview
PDF	R Script	oneChannelGUI Stand Alone Functions
PDF	R Script	oneChannelGUI What is New
PDF		Reference Manual

Details

biocViews	HighThroughputSequencing, RNAseq, Microarray, OneChannel, DataImport, QualityControl, Preprocessing, Statistics, DifferentialExpression, GUI, MultipleComparisons
Depends	Biobase, affylmGUI, tkWidgets, IRanges, Rsamtools, Biostrings
Imports
Suggests	annotate, genefilter, maSigPro, pamr, pdmclass, ChIPpeakAnno, chipseq, BSgenome, Rgraphviz, affy, annaffy, affyPLM, multtest, ssize, sizepower, siggenes, RankProd, org.Hs.eg.db, org.Mm.eg.db, org.Rn.eg.db, edgeR, metaArray, MergeMaid, biomaRt, GenomeGraphs, AffyCompatible, rtracklayer, Genominator, EDASeq, limma, DESeq, goseq, hugene10sttranscriptcluster.db, mogene10sttranscriptcluster.db, ragene10sttranscriptcluster.db, GOstats, AnnotationDbi, preprocessCore, baySeq, HuExExonProbesetLocation, MoExExonProbesetLocation, RaExExonProbesetLocation, snow, RmiR, RmiR.Hs.miRNA, BSgenome.Hsapiens.UCSC.hg19, BSgenome.Mmusculus.UCSC.mm9, BSgenome.Rnorvegicus.UCSC.rn4, R.utils
System Requirements
License	The Artistic License, Version 2.0
URL	http://www.bioinformatica.unito.it/oneChannelGUI/
Depends On Me
Imports Me
Suggests Me
Version	1.20.19
Since	Bioconductor 2.0 (R-2.5)

Package Downloads

Package Source	oneChannelGUI_1.20.19.tar.gz
Windows Binary	oneChannelGUI_1.20.19.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary	oneChannelGUI_1.20.19.tgz
Package Downloads Report	Download Stats

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