chipseq: A package for analyzing chipseq data

Bioconductor version: 2.9

Tools for helping process short read data for chipseq experiments

Author: Deepayan Sarkar, Robert Gentleman, Michael Lawrence, Zizhen Yao

Maintainer: Bioconductor Package Maintainer <maintainer at>

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PDF R Script A Sample ChIP-Seq analysis workflow
PDF   Reference Manual


biocViews ChIPseq
Depends R (>= 2.10), methods, IRanges(>= 1.11.16), GenomicRanges(>= 1.3.4), BSgenome, ShortRead
Imports BSgenome, GenomicRanges, IRanges, lattice, methods, ShortRead, stats
Suggests GenomicFeatures, BSgenome.Mmusculus.UCSC.mm9, TxDb.Mmusculus.UCSC.mm9.knownGene
System Requirements
License Artistic-2.0
Depends On Me
Imports Me
Suggests Me oneChannelGUI
Version 1.4.0
Since Bioconductor 2.5 (R-2.10)

Package Downloads

Package Source chipseq_1.4.0.tar.gz
Windows Binary (32- & 64-bit)
MacOS 10.5 (Leopard) binary chipseq_1.4.0.tgz
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