siggenes

Multiple testing using SAM and Efron's empirical Bayes approaches

Bioconductor version: 2.9

Identification of differentially expressed genes and estimation of the False Discovery Rate (FDR) using both the Significance Analysis of Microarrays (SAM) and the Empirical Bayes Analyses of Microarrays (EBAM).

Author: Holger Schwender

Maintainer: Holger Schwender <holger.schw at gmx.de>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("siggenes")

To cite this package in a publication, start R and enter:

    citation("siggenes")

Documentation

PDF	R Script	siggenes Manual
PDF		siggenesRnews.pdf
PDF		Reference Manual

Details

biocViews	MultipleComparisons, Microarray, GeneExpression, SNP, ExonArray, DifferentialExpression
Depends	methods, multtest, Biobase, splines
Imports
Suggests	affy, annotate, genefilter, KernSmooth, scrime (>= 1.2.5)
System Requirements
License	LGPL (>= 2)
URL
Depends On Me	KCsmart
Imports Me	charm, GeneSelector, minfi
Suggests Me	GeneSelector, logicFS, oneChannelGUI, XDE
Version	1.28.0
Since	Bioconductor 1.6 (R-2.1) or earlier

Package Downloads

Package Source	siggenes_1.28.0.tar.gz
Windows Binary	siggenes_1.28.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary	siggenes_1.28.0.tgz
Package Downloads Report	Download Stats

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