Annotation tools for Affymetrix biological metadata

Bioconductor version: 2.9

Functions for handling data from Bioconductor Affymetrix annotation data packages. Produces compact HTML and text reports including experimental data and URL links to many online databases. Allows searching biological metadata using various criteria.

Author: Colin A. Smith <annaffy at>

Maintainer: Colin A. Smith <annaffy at>

To install this package, start R and enter:


To cite this package in a publication, start R and enter:



PDF R Script annaffy Primer
PDF   Reference Manual


biocViews OneChannel, Microarray, Annotation, GO, Pathways, ReportWriting
Depends R (>= 2.5.0), methods, Biobase, GO.db, KEGG.db
Imports AnnotationDbi(>= 0.1.15)
Suggests hgu95av2.db, multtest, tcltk
System Requirements
License LGPL
Depends On Me a4Base, a4Reporting, PGSEA, webbioc
Imports Me affycoretools, GGtools
Suggests Me AffyExpress, ArrayTools, BiocCaseStudies, maDB, oneChannelGUI
Version 1.26.0
Since Bioconductor 1.6 (R-2.1) or earlier

Package Downloads

Package Source annaffy_1.26.0.tar.gz
Windows Binary (32- & 64-bit)
MacOS 10.5 (Leopard) binary annaffy_1.26.0.tgz
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