goseq
Gene Ontology analyser for RNA-seq and other length biased data
Bioconductor version: 2.9
Detects Gene Ontology and/or other user defined categories which are over/under represented in RNA-seq data
Author: Matthew Young
Maintainer: Matthew Young <myoung at wehi.edu.au>
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("goseq")
To cite this package in a publication, start R and enter:
citation("goseq")
Documentation
| R Script | goseq User's Guide | |
| Reference Manual |
Details
| biocViews | HighThroughputSequencingData, GO, GeneExpression, Transcription, RNAseq |
| Depends | R (>= 2.11.0), BiasedUrn, geneLenDataBase |
| Imports | mgcv, graphics, stats, utils, AnnotationDbi |
| Suggests | GO.db, edgeR, org.Hs.eg.db |
| System Requirements | |
| License | LGPL (>= 2) |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | oneChannelGUI |
| Version | 1.6.1 |
| Since | Bioconductor 2.6 (R-2.11) |
Package Downloads
| Package Source | goseq_1.6.1.tar.gz |
| Windows Binary | goseq_1.6.1.zip (32- & 64-bit) |
| MacOS 10.5 (Leopard) binary | goseq_1.6.0.tgz |
| Package Downloads Report | Download Stats |
Common Bioconductor workflows include:
- Oligonucleotide Arrays
- High-throughput Sequencing
- Annotation
- Variants
- Flow Cytometry and other assays
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