source("http://bioconductor.org/biocLite.R")
biocLite("RforProteomics")

RforProteomics

Companion package to the 'Using R and Bioconductor for proteomics data analysis' publication

Bioconductor version: 2.13

This package contains code to illustrate the 'Using R and Bioconductor for proteomics data analysis' manuscript. The vignette describes the code and data needed to reproduce the examples and figures descibed in the paper as well as functions to download the PXD000001 data files.

Author: Laurent Gatto [aut, cre], Sebastian Gibb [ctb]

Maintainer: Laurent Gatto <lg390 at cam.ac.uk>

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("RforProteomics")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("RforProteomics")

 

PDF	R Script	R for Proteomics
PDF	R Script	RforProteomics Bioc2013 poster
PDF		Reference Manual
Text		NEWS

Details

biocViews	ExperimentData, MassSpectrometry, MassSpectrometryData, Proteomics
Version	1.0.14
License	Artistic-2.0
Depends
Imports	R.utils, Biobase
Suggests	mzR, MSnbase, xcms, msdata, isobar, MALDIquant, MALDIquantForeign, readBrukerFlexData, rTANDEM, synapter, synapterdata, IPPD, Rdisop, OrgMassSpecR, BRAIN, rols, hpar, GO.db, org.Hs.eg.db, biomaRt, RColorBrewer, ggplot2, reshape2, knitr, biocViews, xtable
System Requirements
URL	http://lgatto.github.com/RforProteomics/
Depends On Me
Imports Me
Suggests Me	qcmetrics

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	RforProteomics_1.0.14.tar.gz
Windows Binary	RforProteomics_1.0.14.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)	RforProteomics_1.0.14.tgz
Browse/checkout source	(username/password: readonly)
Package Downloads Report	Download Stats