source("http://bioconductor.org/biocLite.R")
biocLite("rTANDEM")

rTANDEM

Encapsulates X!Tandem in R.

Bioconductor version: 2.13

This package encapsulate X!Tandem in R. In its most basic functionality, this package allows to call tandem(input) from R, just as tandem.exe /path/to/input.xml would be used to run X!Tandem from the command line. Classes are also provided for taxonomy and parameters objects and methods are provided to convert xml files to R objects and vice versa.

Author: Frederic Fournier <frederic.fournier at crchuq.ulaval.ca>, Charles Joly Beauparlant <charles.joly-beauparlant at crchul.ulaval.ca>, Rene Paradis <rene.paradis at genome.ulaval.ca>, Arnaud Droit <arnaud.droit at crchuq.ulaval.ca>

Maintainer: Frederic Fournier <frederic.fournier at crchuq.ulaval.ca>

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("rTANDEM")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("rTANDEM")

 

PDF	R Script	The rTANDEM users guide
PDF		Reference Manual
Text		README
Text		NEWS
Text		LICENSE

Details

biocViews	MassSpectrometry, Proteomics, Software
Version	1.2.1
In Bioconductor since	BioC 2.12 (R-3.0)
License	Artistic-1.0 | file LICENSE
Depends	XML, Rcpp, data.table (>= 1.8.8)
Imports	methods
Suggests	biomaRt
System Requirements	rTANDEM uses expat and pthread libraries. See the README file for details.
URL
Depends On Me	shinyTANDEM
Imports Me
Suggests Me	RforProteomics

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	rTANDEM_1.2.1.tar.gz
Windows Binary	rTANDEM_1.2.1.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)	rTANDEM_1.2.1.tgz
Browse/checkout source	(username/password: readonly)
Package Downloads Report	Download Stats