source("http://bioconductor.org/biocLite.R")
biocLite("mzR")

mzR

parser for netCDF, mzXML, mzData and mzML files (mass spectrometry data)

Bioconductor version: 2.13

mzR provides a unified API to the common file formats and parsers available for mass spectrometry data. It comes with a wrapper for the ISB random access parser for mass spectrometry mzXML, mzData and mzML files. The package contains the original code written by the ISB, and a subset of the proteowizard library for mzML. The netCDF reading code has previously been used in XCMS.

Author: Bernd Fischer, Steffen Neumann, Laurent Gatto

Maintainer: Bernd Fischer <bernd.fischer at embl.de>, Steffen Neumann <sneumann at ipb-halle.de>, Laurent Gatto <lg390 at cam.ac.uk>

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("mzR")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("mzR")

 

PDF	R Script	mzR, Ramp, mzXML, mzData, mzML
PDF		Reference Manual
Text		NEWS

Details

biocViews	Bioinformatics, DataImport, Infrastructure, MassSpectrometry, Metabolomics, Proteomics, Software
Version	1.8.1
In Bioconductor since	BioC 2.9 (R-2.14)
License	Artistic-2.0
Depends	Rcpp (>= 0.10.1), methods, utils
Imports	Biobase
Suggests	msdata(>= 0.1.9), RUnit, faahKO
System Requirements	GNU make, NetCDF, zlib
URL
Depends On Me	MSnbase, RMassBank, TargetSearch, xcms
Imports Me
Suggests Me	qcmetrics, RforProteomics

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	mzR_1.8.1.tar.gz
Windows Binary	mzR_1.8.1.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)	mzR_1.8.1.tgz
Browse/checkout source	(username/password: readonly)
Package Downloads Report	Download Stats