source("http://bioconductor.org/biocLite.R")
biocLite("SNPchip")

SNPchip

Visualizations for copy number alterations

Bioconductor version: 2.13

This package defines methods for visualizing high-throughput genomic data

Author: Robert Scharpf <rscharpf at jhsph.edu> and Ingo Ruczinski

Maintainer: Robert Scharpf <rscharpf at jhsph.edu>

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("SNPchip")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("SNPchip")

 

PDF	R Script	Plotting Idiograms
PDF		Reference Manual

Details

biocViews	CopyNumberVariants, GeneticVariability, SNP, Software, Visualization
Version	2.8.0
In Bioconductor since	BioC 2.0 (R-2.5)
License	LGPL (>= 2)
Depends	R (>= 2.14.0)
Imports	graphics, lattice, grid, foreach, utils, methods, oligoClasses(>= 1.21.12), Biobase, GenomicRanges
Suggests	crlmm(>= 1.17.14), IRanges, RUnit
System Requirements
URL	http://www.biostat.jhsph.edu/~iruczins/software/snpchip.html
Depends On Me	mBPCR
Imports Me	crlmm, phenoTest
Suggests Me	Category, MinimumDistance, oligoClasses, VanillaICE

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	SNPchip_2.8.0.tar.gz
Windows Binary	SNPchip_2.8.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)	SNPchip_2.8.0.tgz
Browse/checkout source	(username/password: readonly)
Package Downloads Report	Download Stats