ind1KG

Data from 1000 Genomes, NA19240 (female) chr6 excerpt

Bioconductor version: 2.8

Elements of samtools/bioc workflow for dealing with personal sequence focusing on identification and interpretation of rare variants

Author: VJ Carey <stvjc at channing.harvard.edu>

Maintainer: VJ Carey <stvjc at channing.harvard.edu>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("ind1KG")

To cite this package in a publication, start R and enter:

    citation("ind1KG")

Documentation

PDF R Script ind1KG -- 1000 genomes data demo
PDF R Script Notes for eSet developers
PDF   Reference Manual

Details

biocViews Genetics, HighThroughputSequencing
Depends R (>= 2.10.1), Rsamtools
Imports
Suggests GenomicFeatures, rtracklayer, org.Hs.eg.db, chopsticks, SNPlocs.Hsapiens.dbSNP.20080617, lumiHumanIDMapping, GGBase, GGtools, hmyriB36
System Requirements
License Artistic-2.0
URL
Depends On Me
Imports Me
Suggests Me
Version 0.1.8

Package Downloads

Package Source ind1KG_0.1.8.tar.gz
Windows Binary ind1KG_0.1.8.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary ind1KG_0.1.8.tgz
Package Downloads Report Download Stats

Workflows »

Common Bioconductor workflows include:

 

Mailing Lists »

Post questions about Bioconductor packages to our mailing lists. Read the posting guide before posting!

Fred Hutchinson Cancer Research Center