snpStats

SnpMatrix and XSnpMatrix classes and methods

Bioconductor version: 2.8

Classes and statistical methods for large SNP association studies, extending the snpMatrix package

Author: David Clayton <david.clayton at cimr.cam.ac.uk>

Maintainer: David Clayton <david.clayton at cimr.cam.ac.uk>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("snpStats")

To cite this package in a publication, start R and enter:

    citation("snpStats")

Documentation

PDF R Script Data input
PDF R Script Imputation and meta-analysis
PDF R Script LD statistics
PDF R Script Principal components analysis
PDF R Script snpMatrix-differences
PDF R Script snpStats introduction
PDF R Script TDT tests
PDF   Reference Manual

Details

biocViews Microarray, SNP, GeneticVariability
Depends R(>= 2.3.0), survival, methods, Matrix
Imports graphics, grDevices, methods, stats, survival, utils, Matrix
Suggests hexbin
System Requirements
License GPL-3
URL http://www-gene.cimr.cam.ac.uk/clayton
Depends On Me GGdata
Imports Me
Suggests Me
Version 1.2.1
Since Bioconductor 2.8 (R-2.13)

Package Downloads

Package Source snpStats_1.2.1.tar.gz
Windows Binary snpStats_1.2.1.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary snpStats_1.2.1.tgz
Package Downloads Report Download Stats

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