To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("snpStats")

In most cases, you don't need to download the package archive at all.

snpStats

   

This package is for version 2.8 of Bioconductor; for the stable, up-to-date release version, see snpStats.

SnpMatrix and XSnpMatrix classes and methods

Bioconductor version: 2.8

Classes and statistical methods for large SNP association studies, extending the snpMatrix package

Author: David Clayton <david.clayton at cimr.cam.ac.uk>

Maintainer: David Clayton <david.clayton at cimr.cam.ac.uk>

Citation (from within R, enter citation("snpStats")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("snpStats")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("snpStats")

 

PDF data-input-vignette.pdf
PDF differences.pdf
PDF imputation-vignette.pdf
PDF ld-vignette.pdf
PDF pca-vignette.pdf
PDF snpStats-vignette.pdf
PDF tdt-vignette.pdf
PDF   Reference Manual

Details

biocViews GeneticVariability, Microarray, SNP, Software
Version 1.2.1
In Bioconductor since BioC 2.8 (R-2.13) (5 years)
License GPL-3
Depends R (>= 2.3.0), survival, methods, Matrix
Imports graphics, grDevices, methods, stats, survival, utils, Matrix
LinkingTo
Suggests hexbin
SystemRequirements
Enhances
URL http://www-gene.cimr.cam.ac.uk/clayton
Depends On Me GGBase, GGdata, GGtools
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source snpStats_1.2.1.tar.gz
Windows Binary snpStats_1.2.1.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)
Mac OS X 10.9 (Mavericks)
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/snpStats/tree/release-2.8
Package Short Url http://bioconductor.org/packages/snpStats/
Package Downloads Report Download Stats

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