DOI: 10.18129/B9.bioc.GGtools    

This package is for version 3.7 of Bioconductor; for the stable, up-to-date release version, see GGtools.

software and data for analyses in genetics of gene expression

Bioconductor version: 3.7

software and data for analyses in genetics of gene expression and/or DNA methylation

Author: VJ Carey <stvjc at>

Maintainer: VJ Carey <stvjc at>

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PDF R Script GGtools: software for eQTL identification
PDF   Reference Manual
Text   NEWS


biocViews GeneExpression, GeneticVariability, Genetics, SNP, Software
Version 5.16.0
In Bioconductor since BioC 1.9 (R-2.4) (12 years)
License Artistic-2.0
Depends R (>= 2.14), GGBase(>= 3.19.7), data.table, parallel, Homo.sapiens
Imports methods, utils, stats, BiocGenerics(>= 0.25.1), snpStats, ff, Rsamtools, AnnotationDbi, Biobase, bit, VariantAnnotation, hexbin, rtracklayer, Gviz, stats4, S4Vectors(>= 0.9.25), IRanges, GenomeInfoDb, GenomicRanges(>= 1.29.6), iterators, Biostrings, ROCR, biglm, ggplot2, reshape2
Suggests GGdata, illuminaHumanv1.db, SNPlocs.Hsapiens.dbSNP144.GRCh37, multtest, aod, rmeta
Enhances MatrixEQTL, foreach, doParallel, gwascat
Depends On Me ceu1kg, cheung2010, eQTL
Imports Me ceuhm3, GeneGeneInteR
Suggests Me cgdv17, dsQTL, GGBase, gQTLBase, hmyriB36
Links To Me
Build Report  

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