DOI: 10.18129/B9.bioc.cheung2010    

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

This package is for version 3.7 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see cheung2010.

resources for genetics of gene expression based on Cheung et al 2010

Bioconductor version: 3.7

Data resources related to the PLoS Biology paper Polymorphic Cis- and Trans-Regulation of Human Gene Expression, including small-footprint smlSet support for 147 hgfocus arrays and corresponding HapMap genotypes at 1.3 million SNP; 0.0.22+ includes cheung_eset... from Leek et al RECOUNT myrna output

Author: Vince Carey <stvjc at>

Maintainer: Vince Carey <stvjc at>

Citation (from within R, enter citation("cheung2010")):


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PDF R Script cheungTrans: checking trans eQTL with hgfocus arrays
PDF   Reference Manual


biocViews ExperimentData, HapMap, Homo_sapiens_Data, RNASeqData, SNPData, SequencingData
Version 0.18.0
License Artistic-2.0
Depends R (>= 2.13.0), Biobase, GGtools, GenomicRanges, hgfocus.db
Imports AnnotationDbi
Suggests SNPlocs.Hsapiens.dbSNP144.GRCh37
Enhances parallel
Depends On Me
Imports Me
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