DOI: 10.18129/B9.bioc.GeneGeneInteR    

This package is for version 3.7 of Bioconductor; for the stable, up-to-date release version, see GeneGeneInteR.

Tools for Testing Gene-Gene Interaction at the Gene Level

Bioconductor version: 3.7

The aim of this package is to propose several methods for testing gene-gene interaction in case-control association studies. Such a test can be done by aggregating SNP-SNP interaction tests performed at the SNP level (SSI) or by using gene-gene multidimensionnal methods (GGI) methods. The package also proposes tools for a graphic display of the results.

Author: Mathieu Emily, Nicolas Sounac, Florian Kroell, Magalie Houee-Bigot

Maintainer: Mathieu Emily <mathieu.emily at>, Magalie Houee-Bigot <magalie.houee at>

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PDF R Script GeneGeneInteR Introduction
PDF R Script Pairwise interaction tests
PDF   Reference Manual
Text   NEWS


biocViews GeneticVariability, Genetics, GenomeWideAssociation, SNP, Software
Version 1.6.0
In Bioconductor since BioC 3.4 (R-3.3) (2 years)
License GPL (>= 2)
Depends R (>= 3.3)
Imports snpStats, mvtnorm, GGtools, Rsamtools, igraph, kernlab, FactoMineR, plspm, IRanges, GenomicRanges, data.table, rioja, grDevices, graphics, stats, utils
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