restfulSE

DOI: 10.18129/B9.bioc.restfulSE    

Access matrix-like HDF5 server content or BigQuery content through a SummarizedExperiment interface

Bioconductor version: Release (3.6)

This package provides functions and classes to interface with remote data stores by operating on SummarizedExperiment-like objects.

Author: Vincent Carey [aut], Shweta Gopaulakrishnan [cre, aut]

Maintainer: Shweta Gopaulakrishnan <reshg at channing.harvard.edu>

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("restfulSE")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("restfulSE")

 

PDF	R Script	restfulSE -- experiments with SE interface to remote HDF5
PDF		Reference Manual
Text		NEWS

Details

biocViews	Coverage, Infrastructure, Sequencing, SingleCell, Software, Transcriptomics
Version	1.0.2
License	Artistic-2.0
Depends	R (>= 3.4), SummarizedExperiment
Imports	utils, stats, methods, S4Vectors, DelayedArray, reshape2, AnnotationDbi, DBI, GO.db, rhdf5client, dplyr (>= 0.7.1), magrittr, bigrquery, ExperimentHub, AnnotationHub
LinkingTo
Suggests	knitr, testthat, Rtsne, org.Mm.eg.db, org.Hs.eg.db, BiocStyle
SystemRequirements
Enhances
URL
Depends On Me	tenXplore
Imports Me
Suggests Me	BiocSklearn
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	restfulSE_1.0.2.tar.gz
Windows Binary	restfulSE_1.0.2.zip
Mac OS X 10.11 (El Capitan)	restfulSE_1.0.2.tgz
Source Repository	git clone https://git.bioconductor.org/packages/restfulSE
Package Short Url	http://bioconductor.org/packages/restfulSE/
Package Downloads Report	Download Stats
Old Source Packages for BioC 3.6	Source Archive