.RESTfulSummarizedExperiment |
Construct RESTfulSummarizedExperiment |
assay |
Construct RESTfulSummarizedExperiment |
assay-method |
Construct RESTfulSummarizedExperiment |
assay-method |
extract assay data |
assayNames-method |
HDF5Server-based assay for SummarizedExperiment |
assayNames-method |
Placeholder for assay name extractor for a BQSummarizedExperiment instance. |
assays-method |
Assays access for RESTfulSummarizedExperiment |
BQSummarizedExperiment-class |
Define a class to use BigQuery data through SummarizedExperiment interface |
cgcConn |
Simplify connection to a BigQuery dataset for the project "isb-cgc" |
dim-method |
Dimension access for RESTfulSummarizedExperiment |
goPatt |
Create a data.frame with ENSEMBL and SYMBOL identifiers associated with a GO TERM specified by a regular expression in 'termPattern' |
gtexTiss |
Convenience function for access to gene-level GTEx tissues, as quantified in recount |
isbCgcDatasets |
Access the dataset names in the "isb-cgc" project |
isbCgcTables |
List the tables in a selected dataset |
RESTfulSummarizedExperiment |
Construct RESTfulSummarizedExperiment |
RESTfulSummarizedExperiment-class |
HDF5Server-based assay for SummarizedExperiment |
RESTfulSummarizedExperiment-method |
Construct RESTfulSummarizedExperiment |
se1.3M |
Convenience functions using EC2 server to extract tenx neurons full or subset data |
se100k |
Convenience functions using EC2 server to extract tenx neurons full or subset data |
seByTumor |
Given a BigQueryConnection to the 2017 GDC-oriented ISB TCGA bigtables, obtain a SummarizedExperiment 'shell' rowData and colData |
seByTumor_2016 |
Given a BigQueryConnection to the 2016 ISB TCGA bigtables, obtain a SummarizedExperiment 'shell' rowData and colData |
tasicCortex |
A set of mouse cortex marker genes. |
[-method |
HDF5Server-based assay for SummarizedExperiment |