chimeraviz

DOI: 10.18129/B9.bioc.chimeraviz    

Visualization tools for gene fusions

Bioconductor version: Release (3.6)

chimeraviz manages data from fusion gene finders and provides useful visualization tools.

Author: Stian Lågstad [aut, cre], Sen Zhao [ctb], Andreas M. Hoff [ctb], Bjarne Johannessen [ctb], Ole Christian Lingjærde [ctb], Rolf Skotheim [ctb]

Maintainer: Stian Lågstad <stianlagstad at gmail.com>

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("chimeraviz")

Documentation

HTML	R Script	chimeraviz
PDF		Reference Manual
Text		NEWS

Details

biocViews	Alignment, Infrastructure, Software
Version	1.4.3
In Bioconductor since	BioC 3.5 (R-3.4) (1 year)
License	Artistic-2.0
Depends	Biostrings, GenomicRanges, IRanges, Gviz, S4Vectors, ensembldb, AnnotationFilter
Imports	methods, readr, grid, Rsamtools, GenomeInfoDb, GenomicAlignments, RColorBrewer, graphics, AnnotationDbi, RCircos, org.Hs.eg.db, rmarkdown, graph, Rgraphviz, DT, plyr, dplyr, BiocStyle, ArgumentCheck
LinkingTo
Suggests	testthat, roxygen2, devtools, knitr
SystemRequirements	bowtie, samtools, and egrep are required for some functionalities
Enhances
URL	https://github.com/stianlagstad/chimeraviz
BugReports	https://github.com/stianlagstad/chimeraviz/issues
Depends On Me
Imports Me
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	chimeraviz_1.4.3.tar.gz
Windows Binary	chimeraviz_1.4.3.zip
Mac OS X 10.11 (El Capitan)	chimeraviz_1.4.3.tgz
Source Repository	git clone https://git.bioconductor.org/packages/chimeraviz
Package Short Url	http://bioconductor.org/packages/chimeraviz/
Package Downloads Report	Download Stats
Old Source Packages for BioC 3.6	Source Archive