AnnotationFilter

DOI: 10.18129/B9.bioc.AnnotationFilter    

Facilities for Filtering Bioconductor Annotation Resources

Bioconductor version: Release (3.6)

This package provides class and other infrastructure to implement filters for manipulating Bioconductor annotation resources. The filters will be used by ensembldb, Organism.dplyr, and other packages.

Author: Martin Morgan [aut], Johannes Rainer [aut], Joachim Bargsten [ctb], Daniel Van Twisk [ctb], Bioconductor Maintainer [cre]

Maintainer: Bioconductor Maintainer <maintainer at bioconductor.org>

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("AnnotationFilter")

Documentation

HTML	R Script	Facilities for Filtering Bioconductor Annotation resources
PDF		Reference Manual
Text		README
Text		NEWS

Details

biocViews	Annotation, Infrastructure, Software
Version	1.2.0
In Bioconductor since	BioC 3.5 (R-3.4) (1 year)
License	Artistic-2.0
Depends	R (>= 3.4.0)
Imports	utils, methods, GenomicRanges, lazyeval
LinkingTo
Suggests	BiocStyle, knitr, testthat, RSQLite, org.Hs.eg.db
SystemRequirements
Enhances
URL	https://github.com/Bioconductor/AnnotationFilter
BugReports	https://github.com/Bioconductor/AnnotationFilter/issues
Depends On Me	chimeraviz, ensembldb, Organism.dplyr
Imports Me	biovizBase, ggbio, Pbase, TVTB
Suggests Me	wiggleplotr
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	AnnotationFilter_1.2.0.tar.gz
Windows Binary	AnnotationFilter_1.2.0.zip
Mac OS X 10.11 (El Capitan)	AnnotationFilter_1.2.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/AnnotationFilter
Package Short Url	http://bioconductor.org/packages/AnnotationFilter/
Package Downloads Report	Download Stats