importJaffa {chimeraviz}R Documentation

Import results from a JAFFA run into a list of Fusion objects.

Description

A function that imports the results from a JAFFA run, typically from a jaffa_results.csv file, into a list of Fusion objects.

Usage

importJaffa(filename, genomeVersion, limit)

Arguments

filename

Filename for the jaffa_results.csv file.

genomeVersion

Which genome was used in mapping (hg19, hg38, etc.).

limit

A limit on how many lines to read.

Value

A list of Fusion objects.

Examples

jaffaData <- system.file(
  "extdata",
  "jaffa_results.csv",
  package = "chimeraviz")
fusions <- importJaffa(jaffaData, "hg19", 3)
# This should import a list of 3 fusions described in Fusion objects.


[Package chimeraviz version 1.4.3 Index]