importStarfusion {chimeraviz} | R Documentation |
A function that imports the results from a STAR-Fusion run, typically from a star-fusion.fusion_candidates.final.abridged file, into a list of Fusion objects.
importStarfusion(filename, genomeVersion, limit)
filename |
Filename for the STAR-Fusion star-fusion.fusion_candidates.final.abridged results file. |
genomeVersion |
Which genome was used in mapping (hg19, hg38, etc.). |
limit |
A limit on how many lines to read. |
A list of Fusion objects.
starfusionData <- system.file( "extdata", "star-fusion.fusion_candidates.final.abridged.txt", package = "chimeraviz") fusions <- importStarfusion(starfusionData, "hg19", 3) # This should import a list of 3 fusions described in Fusion objects.