chimeraviz-internals-fusionsToLinkData {chimeraviz} | R Documentation |
This function takes a list of Fusion objects and creates a data frame in the format that RCircos::RCircos.Link.Plot() expects for link data.
.fusionsToLinkData(fusionList, minLinkWidth = 1, maxLinkWidt = 10)
fusionList |
A list of Fusion objects. |
minLinkWidth |
The minimum link line width. Default = 1 |
maxLinkWidt |
The maximum link line width. Default = 10 |
A data frame with fusion link data compatible with RCircos::RCircos.Link.Plot()
# @examples # Apparently examples shouldn't be set on private functions defuse833ke <- system.file("extdata", "defuse_833ke_results.filtered.tsv", package="chimeraviz") fusions <- importDefuse(defuse833ke, "hg19", 3) linkData <- chimeraviz::.fusionsToLinkData(fusions) # This linkData can be used with RCircos::RCircos.Link.Plot()