importSoapfuse {chimeraviz} | R Documentation |
A function that imports the results from a SOAPfuse run, typically from a final.Fusion.specific.for.genes file, into a list of Fusion objects.
importSoapfuse(filename, genomeVersion, limit)
filename |
Filename for the SOAPfuse final-list-candidate-fusion-genes.txt results file. |
genomeVersion |
Which genome was used in mapping (hg19, hg38, etc.). |
limit |
A limit on how many lines to read. |
A list of Fusion objects.
soapfuse833ke <- system.file( "extdata", "soapfuse_833ke_final.Fusion.specific.for.genes", package = "chimeraviz") fusions <- importSoapfuse(soapfuse833ke, "hg19", 3) # This should import a list of 3 fusions described in Fusion objects.