getFusionByChromosome {chimeraviz}R Documentation

Find fusions that involves genes in the given chromosome.

Description

Helper function to retrieve the Fusion objects that involves genes in the given chromosome name.

Usage

getFusionByChromosome(fusionList, chr)

Arguments

fusionList

A list of Fusion objects.

chr

The chromosome name we're looking for fusions in.

Value

A list of Fusion objects.

Examples

defuse833ke <- system.file(
  "extdata",
  "defuse_833ke_results.filtered.tsv",
  package="chimeraviz")
fusions <- importDefuse(defuse833ke, "hg19", 1)
length(getFusionByChromosome(fusions, "chr1"))
# [1] 1


[Package chimeraviz version 1.4.3 Index]