upstreamPartnerGene {chimeraviz} | R Documentation |
This getter retrieves the upstream PartnerGene object.
This sets the upstream PartnerGene object of a Fusion object
upstreamPartnerGene(x) ## S4 method for signature 'Fusion' upstreamPartnerGene(x) upstreamPartnerGene(object) <- value ## S4 replacement method for signature 'Fusion' upstreamPartnerGene(object) <- value
x |
The Fusion object you wish to retrieve the upstream PartnerGene object for. |
object |
The Fusion object you wish to set a new upstream PartnerGene object for. |
value |
The new PartnerGene object. |
The upstream PartnerGene object.
# Load data defuseData <- system.file( "extdata", "defuse_833ke_results.filtered.tsv", package="chimeraviz") fusions <- importDefuse(defuseData, "hg19", 1) fusion <- fusions[[1]] # Get the upstream fusion partner gene upstreamPartnerGene(fusion) # Load data defuseData <- system.file( "extdata", "defuse_833ke_results.filtered.tsv", package="chimeraviz") fusions <- importDefuse(defuseData, "hg19", 1) fusion <- fusions[[1]] # Set the upstream PartnerGene object to be the same as the downstream PartnerGene object upstreamPartnerGene(fusion) <- downstreamPartnerGene(fusion)