upstreamPartnerGene {chimeraviz}R Documentation

Get the upstream fusion partner gene

Description

This getter retrieves the upstream PartnerGene object.

This sets the upstream PartnerGene object of a Fusion object

Usage

upstreamPartnerGene(x)

## S4 method for signature 'Fusion'
upstreamPartnerGene(x)

upstreamPartnerGene(object) <- value

## S4 replacement method for signature 'Fusion'
upstreamPartnerGene(object) <- value

Arguments

x

The Fusion object you wish to retrieve the upstream PartnerGene object for.

object

The Fusion object you wish to set a new upstream PartnerGene object for.

value

The new PartnerGene object.

Value

The upstream PartnerGene object.

Examples

# Load data
defuseData <- system.file(
  "extdata",
  "defuse_833ke_results.filtered.tsv",
  package="chimeraviz")
fusions <- importDefuse(defuseData, "hg19", 1)
fusion <- fusions[[1]]
# Get the upstream fusion partner gene
upstreamPartnerGene(fusion)

# Load data
defuseData <- system.file(
  "extdata",
  "defuse_833ke_results.filtered.tsv",
  package="chimeraviz")
fusions <- importDefuse(defuseData, "hg19", 1)
fusion <- fusions[[1]]
# Set the upstream PartnerGene object to be the same as the downstream PartnerGene object
upstreamPartnerGene(fusion) <- downstreamPartnerGene(fusion)


[Package chimeraviz version 1.4.3 Index]