DOI: 10.18129/B9.bioc.GSEABase    

Gene set enrichment data structures and methods

Bioconductor version: Release (3.6)

This package provides classes and methods to support Gene Set Enrichment Analysis (GSEA).

Author: Martin Morgan, Seth Falcon, Robert Gentleman

Maintainer: Bioconductor Package Maintainer <maintainer at>

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PDF R Script An introduction to GSEABase
PDF   Reference Manual
Text   NEWS


biocViews GO, GeneExpression, GeneSetEnrichment, GraphAndNetwork, KEGG, Software
Version 1.40.1
In Bioconductor since BioC 2.1 (R-2.6) (10.5 years)
License Artistic-2.0
Depends R (>= 2.6.0), BiocGenerics(>= 0.13.8), Biobase(>= 2.17.8), annotate(>= 1.45.3), methods, graph(>= 1.37.2)
Imports AnnotationDbi, XML
Suggests hgu95av2.db, GO.db,, Rgraphviz, ReportingTools, testthat
Depends On Me AGDEX, BicARE, CCPROMISE, cpvSNP, gCMAP, GRridge, GSVAdata, npGSEA, PROMISE, splineTimeR
Imports Me AUCell, canceR, Category, categoryCompare, cellHTS2, EnrichmentBrowser, gCMAPWeb, GISPA, GSRI, GSVA, HTSanalyzeR, MIGSA, mogsa, oppar, PCpheno, phenoTest, POST, PROMISE, ReportingTools, slalom
Suggests Me BiocCaseStudies, BioCor, clusterProfiler, gage, GlobalAncova, globaltest, GOstats, GSAR, GSEAlm, MAST, PGSEA, phenoTest
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