GSRI

DOI: 10.18129/B9.bioc.GSRI    

Gene Set Regulation Index

Bioconductor version: Release (3.6)

The GSRI package estimates the number of differentially expressed genes in gene sets, utilizing the concept of the Gene Set Regulation Index (GSRI).

Author: Julian Gehring, Kilian Bartholome, Clemens Kreutz, Jens Timmer

Maintainer: Julian Gehring <jg-bioc at gmx.com>

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("GSRI")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GSRI")

 

PDF	R Script	Introduction to the GSRI package: Estimating Regulatory Effects utilizing the Gene Set Regulation Index
PDF		Reference Manual
Text		NEWS

Details

biocViews	DifferentialExpression, GeneRegulation, GeneSetEnrichment, Microarray, Software, Transcription
Version	2.26.0
In Bioconductor since	BioC 2.6 (R-2.11) (8 years)
License	GPL-3
Depends	R (>= 2.14.2), fdrtool
Imports	methods, graphics, stats, utils, genefilter, Biobase, GSEABase, les(>= 1.1.6)
LinkingTo
Suggests	limma, hgu95av2.db
SystemRequirements
Enhances	parallel
URL
Depends On Me
Imports Me
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	GSRI_2.26.0.tar.gz
Windows Binary	GSRI_2.26.0.zip
Mac OS X 10.11 (El Capitan)	GSRI_2.26.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/GSRI
Package Short Url	http://bioconductor.org/packages/GSRI/
Package Downloads Report	Download Stats