DOI: 10.18129/B9.bioc.canceR    

A Graphical User Interface for accessing and modeling the Cancer Genomics Data of MSKCC.

Bioconductor version: Release (3.6)

The package is user friendly interface based on the cgdsr and other modeling packages to explore, compare, and analyse all available Cancer Data (Clinical data, Gene Mutation, Gene Methylation, Gene Expression, Protein Phosphorylation, Copy Number Alteration) hosted by the Computational Biology Center at Memorial-Sloan-Kettering Cancer Center (MSKCC).

Author: Karim Mezhoud. Nuclear Safety & Security Department. Nuclear Science Center of Tunisia.

Maintainer: Karim Mezhoud <kmezhoud at>

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PDF canceR Vignette
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biocViews GUI, GeneExpression, Software
Version 1.10.0
In Bioconductor since BioC 3.1 (R-3.2) (3 years)
License GPL-2
Depends R (>= 3.3), tcltk, tcltk2, cgdsr
Imports GSEABase, GSEAlm, tkrplot, geNetClassifier, RUnit, Formula, rpart, survival, Biobase, phenoTest, circlize, plyr, graphics, stats, utils
Suggests testthat (>= 0.10.0), R.rsp
Depends On Me
Imports Me
Suggests Me
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