BiocParallel
Bioconductor facilities for parallel evaluation
Bioconductor version: Release (3.19)
This package provides modified versions and novel implementation of functions for parallel evaluation, tailored to use with Bioconductor objects.
Author: Martin Morgan [aut, cre], Jiefei Wang [aut], Valerie Obenchain [aut], Michel Lang [aut], Ryan Thompson [aut], Nitesh Turaga [aut], Aaron Lun [ctb], Henrik Bengtsson [ctb], Madelyn Carlson [ctb] (Translated 'Random Numbers' vignette from Sweave to RMarkdown / HTML.), Phylis Atieno [ctb] (Translated 'Introduction to BiocParallel' vignette from Sweave to Rmarkdown / HTML.), Sergio Oller [ctb] (Improved bpmapply() efficiency.,
Maintainer: Martin Morgan <mtmorgan.bioc at gmail.com>
citation("BiocParallel")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("BiocParallel")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("BiocParallel")
1. Introduction to BiocParallel | HTML | R Script |
2. Introduction to BatchtoolsParam | R Script | |
3. Errors, Logs and Debugging | R Script | |
4. Random Numbers in BiocParallel | HTML | R Script |
Reference Manual | ||
NEWS | Text |
Details
biocViews | Infrastructure, Software |
Version | 1.38.0 |
In Bioconductor since | BioC 2.13 (R-3.0) (11 years) |
License | GPL-2 | GPL-3 |
Depends | methods, R (>= 3.5.0) |
Imports | stats, utils, futile.logger, parallel, snow, codetools |
System Requirements | C++11 |
URL | https://github.com/Bioconductor/BiocParallel |
Bug Reports | https://github.com/Bioconductor/BiocParallel/issues |
See More
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | BiocParallel_1.38.0.tar.gz |
Windows Binary | BiocParallel_1.38.0.zip |
macOS Binary (x86_64) | BiocParallel_1.38.0.tgz |
macOS Binary (arm64) | BiocParallel_1.38.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/BiocParallel |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/BiocParallel |
Bioc Package Browser | https://code.bioconductor.org/browse/BiocParallel/ |
Package Short Url | https://bioconductor.org/packages/BiocParallel/ |
Package Downloads Report | Download Stats |