MetaboCoreUtils
Core Utils for Metabolomics Data
Bioconductor version: Release (3.19)
MetaboCoreUtils defines metabolomics-related core functionality provided as low-level functions to allow a data structure-independent usage across various R packages. This includes functions to calculate between ion (adduct) and compound mass-to-charge ratios and masses or functions to work with chemical formulas. The package provides also a set of adduct definitions and information on some commercially available internal standard mixes commonly used in MS experiments.
Author: Johannes Rainer [aut, cre] 
, Michael Witting [aut] , Andrea Vicini [aut], Liesa Salzer [ctb] , Sebastian Gibb [aut] , Michael Stravs [ctb] , Roger Gine [aut] , Philippine Louail [aut]
Maintainer: Johannes Rainer <Johannes.Rainer at eurac.edu>
citation("MetaboCoreUtils")):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("MetaboCoreUtils")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("MetaboCoreUtils")| Core Utils for Metabolomics Data | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | Infrastructure, MassSpectrometry, Metabolomics, Software |
| Version | 1.12.0 |
| In Bioconductor since | BioC 3.13 (R-4.1) (3.5 years) |
| License | Artistic-2.0 |
| Depends | R (>= 4.0) |
| Imports | utils, MsCoreUtils, BiocParallel, methods, stats |
| System Requirements | |
| URL | https://github.com/RforMassSpectrometry/MetaboCoreUtils |
| Bug Reports | https://github.com/RforMassSpectrometry/MetaboCoreUtils/issues |
See More
| Suggests | BiocStyle, testthat, knitr, rmarkdown, robustbase |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | CompoundDb, MetaboAnnotation, Spectra, xcms |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | MetaboCoreUtils_1.12.0.tar.gz |
| Windows Binary (x86_64) | MetaboCoreUtils_1.12.0.zip |
| macOS Binary (x86_64) | MetaboCoreUtils_1.12.0.tgz |
| macOS Binary (arm64) | MetaboCoreUtils_1.12.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/MetaboCoreUtils |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/MetaboCoreUtils |
| Bioc Package Browser | https://code.bioconductor.org/browse/MetaboCoreUtils/ |
| Package Short Url | https://bioconductor.org/packages/MetaboCoreUtils/ |
| Package Downloads Report | Download Stats |