MetaboAnnotation
Utilities for Annotation of Metabolomics Data
Bioconductor version: Release (3.19)
High level functions to assist in annotation of (metabolomics) data sets. These include functions to perform simple tentative annotations based on mass matching but also functions to consider m/z and retention times for annotation of LC-MS features given that respective reference values are available. In addition, the function provides high-level functions to simplify matching of LC-MS/MS spectra against spectral libraries and objects and functionality to represent and manage such matched data.
Author: Michael Witting [aut] 
, Johannes Rainer [aut, cre] , Andrea Vicini [aut] , Carolin Huber [aut] , Philippine Louail [aut] , Nir Shachaf [ctb]
Maintainer: Johannes Rainer <Johannes.Rainer at eurac.edu>
citation("MetaboAnnotation")):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("MetaboAnnotation")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("MetaboAnnotation")| Annotation of MS-based Metabolomics Data | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | Infrastructure, MassSpectrometry, Metabolomics, Software |
| Version | 1.8.1 |
| In Bioconductor since | BioC 3.15 (R-4.2) (2.5 years) |
| License | Artistic-2.0 |
| Depends | R (>= 4.0.0) |
| Imports | BiocGenerics, MsCoreUtils, MetaboCoreUtils, ProtGenerics, methods, S4Vectors, Spectra(>= 1.13.2), BiocParallel, SummarizedExperiment, QFeatures, AnnotationHub, graphics, CompoundDb |
| System Requirements | |
| URL | https://github.com/RforMassSpectrometry/MetaboAnnotation |
| Bug Reports | https://github.com/RforMassSpectrometry/MetaboAnnotation/issues |
See More
| Suggests | testthat, knitr, msdata, BiocStyle, rmarkdown, plotly, shiny, shinyjs, DT, microbenchmark, mzR |
| Linking To | |
| Enhances | RMariaDB, RSQLite |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | MetaboAnnotation_1.8.1.tar.gz |
| Windows Binary (x86_64) | MetaboAnnotation_1.8.1.zip |
| macOS Binary (x86_64) | MetaboAnnotation_1.8.1.tgz |
| macOS Binary (arm64) | MetaboAnnotation_1.8.1.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/MetaboAnnotation |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/MetaboAnnotation |
| Bioc Package Browser | https://code.bioconductor.org/browse/MetaboAnnotation/ |
| Package Short Url | https://bioconductor.org/packages/MetaboAnnotation/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.19 | Source Archive |