DOI: 10.18129/B9.bioc.escape  

This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see escape.

Easy single cell analysis platform for enrichment

Bioconductor version: 3.17

A bridging R package to facilitate gene set enrichment analysis (GSEA) in the context of single-cell RNA sequencing. Using raw count information, Seurat objects, or SingleCellExperiment format, users can perform and visualize GSEA across individual cells.

Author: Nick Borcherding [aut, cre], Jared Andrews [aut]

Maintainer: Nick Borcherding <ncborch at>

Citation (from within R, enter citation("escape")):


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biocViews Annotation, Classification, GeneSetEnrichment, GeneSignaling, Pathways, Sequencing, SingleCell, Software
Version 1.10.0
In Bioconductor since BioC 3.12 (R-4.0) (3 years)
License GPL-2
Depends R (>= 4.1)
Imports grDevices, dplyr, ggplot2, GSEABase, GSVA, SingleCellExperiment, ggridges, msigdbr, stats, BiocParallel, Matrix, UCell, broom, reshape2, patchwork, MatrixGenerics, utils, rlang, stringr, data.table, SummarizedExperiment, methods
Suggests Seurat, SeuratObject, knitr, rmarkdown, markdown, BiocStyle, testthat, dittoSeq(>= 1.1.2)
Depends On Me
Imports Me
Suggests Me Cepo
Links To Me
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Source Package escape_1.10.0.tar.gz
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