This package is for version 3.13 of Bioconductor; for the stable, up-to-date release version, see chipenrich.data.
Bioconductor version: 3.13
Supporting data for the chipenrich package. Includes pre-defined gene sets, gene locus definitions, and mappability estimates.
Author: Ryan P. Welch [aut, cph], Chee Lee [aut], Raymond G. Cavalcante [aut], Kai Wang [cre], Laura J. Scott [ths], Maureen A. Sartor [ths]
Maintainer: Raymond G. Cavalcante <rcavalca at umich.edu>
Citation (from within R,
enter citation("chipenrich.data")
):
To install this package, start R (version "4.1") and enter:
if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("chipenrich.data")
For older versions of R, please refer to the appropriate Bioconductor release.
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("chipenrich.data")
HTML | R Script | chipenrich.data |
Reference Manual | ||
Text | NEWS |
biocViews | ChIPSeq, Epigenetics, ExperimentData, FunctionalGenomics, GeneSetEnrichment, HistoneModification, Regression |
Version | 2.16.0 |
License | GPL-3 |
Depends | R (>= 3.5.0) |
Imports | AnnotationDbi, BiocGenerics, methods, GenomicRanges, GenomeInfoDb, IRanges, readr, rtracklayer, S4Vectors, utils |
LinkingTo | |
Suggests | BiocStyle, devtools, knitr, rmarkdown, roxygen2, testthat, GO.db, org.Dm.eg.db, org.Dr.eg.db, org.Hs.eg.db, org.Mm.eg.db, org.Rn.eg.db, TxDb.Dmelanogaster.UCSC.dm3.ensGene, TxDb.Dmelanogaster.UCSC.dm6.ensGene, TxDb.Drerio.UCSC.danRer10.refGene, TxDb.Hsapiens.UCSC.hg19.knownGene, TxDb.Hsapiens.UCSC.hg38.knownGene, TxDb.Mmusculus.UCSC.mm9.knownGene, TxDb.Mmusculus.UCSC.mm10.knownGene, TxDb.Rnorvegicus.UCSC.rn4.ensGene, TxDb.Rnorvegicus.UCSC.rn5.refGene, TxDb.Rnorvegicus.UCSC.rn6.refGene |
SystemRequirements | |
Enhances | |
URL | |
Depends On Me | |
Imports Me | chipenrich |
Suggests Me | |
Links To Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Source Package | chipenrich.data_2.16.0.tar.gz |
Windows Binary | |
macOS 10.13 (High Sierra) | |
Source Repository | git clone https://git.bioconductor.org/packages/chipenrich.data |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/chipenrich.data |
Package Short Url | https://bioconductor.org/packages/chipenrich.data/ |
Package Downloads Report | Download Stats |
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