TxDb.Hsapiens.UCSC.hg19.knownGene

DOI: 10.18129/B9.bioc.TxDb.Hsapiens.UCSC.hg19.knownGene    

This package is for version 3.13 of Bioconductor; for the stable, up-to-date release version, see TxDb.Hsapiens.UCSC.hg19.knownGene.

Annotation package for TxDb object(s)

Bioconductor version: 3.13

Exposes an annotation databases generated from UCSC by exposing these as TxDb objects

Author: Marc Carlson, Bioconductor Package Maintainer <maintainer at bioconductor.org> [cre]

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Citation (from within R, enter citation("TxDb.Hsapiens.UCSC.hg19.knownGene")):

Installation

To install this package, start R (version "4.1") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("TxDb.Hsapiens.UCSC.hg19.knownGene")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF   Reference Manual

Details

biocViews AnnotationData, Genetics, Homo_sapiens, TxDb
Version 3.2.2
License Artistic-2.0
Depends GenomicFeatures(>= 1.21.30)
Imports AnnotationDbi
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me annotation, FDb.InfiniumMethylation.hg19, Homo.sapiens, variants, vulcan
Imports Me ALPS, appreci8R, ChIPQC, ChIPseeker, decompTumor2Sig, HiLDA, musicatk, nearBynding, profileplyr, RareVariantVis, rCGH, UMI4Cats, uncoverappLib
Suggests Me AllelicImbalance, AnnotationDbi, annotatr, ATACseqQC, beadarray, BiocOncoTK, BiocParallel, biomvRCNS, biovizBase, bumphunter, cgdv17, chipenrich.data, ChIPpeakAnno, chromPlot, cpvSNP, CRISPRseek, derfinder, derfinderPlot, esATAC, FRASER, GA4GHclient, GA4GHshiny, gage, geneAttribution, GENESIS, GenomicAlignments, GenomicFeatures, GenomicRanges, GenomicScores, GenVisR, ggbio, gmapR, groHMM, GUIDEseq, gwascat, HTSeqGenie, InPAS, karyoploteR, MAST, MesKit, methyAnalysis, MutationalPatterns, NoRCE, OUTRIDER, pageRank, PureCN, R3CPET, ramr, regionReport, RiboProfiling, rtracklayer, SGSeq, SigFuge, SplicingGraphs, StructuralVariantAnnotation, SummarizedExperiment, TCGAutils, TFEA.ChIP, trackViewer, transcriptR, tximport, VariantAnnotation, VariantFiltering
Links To Me

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package TxDb.Hsapiens.UCSC.hg19.knownGene_3.2.2.tar.gz
Windows Binary
macOS 10.13 (High Sierra)
Package Short Url https://bioconductor.org/packages/TxDb.Hsapiens.UCSC.hg19.knownGene/
Package Downloads Report Download Stats

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