To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("Pbase")

In most cases, you don't need to download the package archive at all.

Pbase

Manipulating and exploring protein and proteomics data

Bioconductor version: 3.0

A set of classes and functions to investigate and understand protein sequence data in the context of a proteomics experiment.

Author: Laurent Gatto [aut], Sebastian Gibb [aut, cre]

Maintainer: Sebastian Gibb <mail at sebastiangibb.de>, Laurent Gatto <lg390 at cam.ac.uk>

Citation (from within R, enter citation("Pbase")):

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("Pbase")

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("Pbase")

biocViews	DataImport, DataRepresentation, Infrastructure, MassSpectrometry, Proteomics, Software, Visualization
Version	0.4.0
In Bioconductor since	BioC 3.1 (R-3.2)
License	GPL-3
Depends	R (>= 2.10), methods, BiocGenerics, Rcpp, Gviz
Imports	cleaver(>= 1.3.6), Biobase, Biostrings, IRanges, S4Vectors, mzID, mzR(>= 1.99.1), MSnbase(>= 1.13.5), Pviz
LinkingTo
Suggests	testthat (>= 0.8), ggplot2, BSgenome.Hsapiens.UCSC.hg19, biomaRt, TxDb.Hsapiens.UCSC.hg19.knownGene, knitr, BiocStyle
SystemRequirements
Enhances
URL	https://github.com/ComputationalProteomicsUnit/Pbase
Depends On Me
Imports Me
Suggests Me
Build Report

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