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biocLite("cleaver")
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cleaver
Cleavage of Polypeptide Sequences
Bioconductor version: 3.0
In-silico cleavage of polypeptide sequences. The cleavage rules are taken from: http://web.expasy.org/peptide_cutter/peptidecutter_enzymes.html
Author: Sebastian Gibb [aut, cre]
Maintainer: Sebastian Gibb <mail at sebastiangibb.de>
Citation (from within R,
enter citation("cleaver")):
Installation
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("cleaver")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("cleaver")
| R Script | in-silico cleavage of polypeptides | |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | Proteomics, Software |
| Version | 1.4.0 |
| In Bioconductor since | BioC 2.13 (R-3.0) |
| License | GPL (>= 3) |
| Depends | R (>= 3.0.0), methods, Biostrings(>= 1.29.8) |
| Imports | IRanges |
| LinkingTo | |
| Suggests | testthat (>= 0.8), knitr, BiocStyle(>= 0.0.14), BRAIN, UniProt.ws(>= 2.1.4) |
| SystemRequirements | |
| Enhances | |
| URL | https://github.com/sgibb/cleaver/ |
| Depends On Me | |
| Imports Me | Pbase, synapter |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | cleaver_1.4.0.tar.gz |
| Windows Binary | cleaver_1.4.0.zip |
| Mac OS X 10.6 (Snow Leopard) | cleaver_1.4.0.tgz |
| Mac OS X 10.9 (Mavericks) | cleaver_1.4.0.tgz |
| Browse/checkout source | (username/password: readonly) |
| Package Downloads Report | Download Stats |
Common Bioconductor workflows include:
- Oligonucleotide Arrays
- High-throughput Sequencing
- Counting Reads for Differential Expression (parathyroideSE vignette)
- Annotation
- Annotating Variants
- Annotating Ranges
- Flow Cytometry and other assays
- Candidate Binding Sites for Known Transcription Factors
- Cloud-enabled cis-eQTL search and annotation
- RNA-Seq workflow: gene-level exploratory analysis and differential expression
- Changing genomic coordinate systems with rtracklayer::liftOver
- Mass spectrometry and proteomics data analysis
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