ceu1kg
CEU (N=60) genotypes from 1000 genomes pilot phase I
Bioconductor version: 2.9
CEU genotypes from 1000 genomes "low coverage" pilot phase I (approx 8 million SNP calls released July 2010); includes Wellcome trust GENEVAR expression for 43 indiv
Author: VJ Carey <stvjc at channing.harvard.edu>
Maintainer: VJ Carey <stvjc at channing.harvard.edu>
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("ceu1kg")
To cite this package in a publication, start R and enter:
citation("ceu1kg")
Documentation
| R Script | ceu1kg overview | |
| Reference Manual |
Details
| biocViews | Genetics, SNP |
| Depends | R (>= 2.12.0), GGBase(>= 3.9.0), GGtools, Biobase |
| Imports | |
| Suggests | SNPlocs.Hsapiens.dbSNP.20101109 |
| System Requirements | |
| License | Artistic-2.0 |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | GGtools |
| Version | 0.0.29 |
Package Downloads
| Package Source | ceu1kg_0.0.29.tar.gz |
| Windows Binary | ceu1kg_0.0.29.zip (32- & 64-bit) |
| MacOS 10.5 (Leopard) binary | ceu1kg_0.0.29.tgz |
| Package Downloads Report | Download Stats |
Common Bioconductor workflows include:
- Oligonucleotide Arrays
- High-throughput Sequencing
- Annotation
- Variants
- Flow Cytometry and other assays
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