infrastructure for genetics of gene expression (c) 2008 VJ Carey

Bioconductor version: 2.9

infrastructure for dealing with hapmap SNP reports, GWAS, etc.

Author: Vince Carey <stvjc at>

Maintainer: Vince Carey <stvjc at>

To install this package, start R and enter:


To cite this package in a publication, start R and enter:



PDF R Script GGBase overview
PDF R Script smlSet construction overview
PDF R Script snp location metadata overview
PDF   Reference Manual


biocViews SNP, GeneticVariability, Genetics, Bioinformatics
Depends R (>= 2.13.0), methods, Biobase(>= 2.13.0), snpStats(>= 1.1.10), RSQLite, genefilter
Imports AnnotationDbi
Suggests illuminaHumanv1.db, SNPlocs.Hsapiens.dbSNP.20090506
System Requirements
License Artistic-2.0
Depends On Me ceu1kg, ceuhm3, encoDnaseI, GGdata, GGtools, hmyriB36
Imports Me
Suggests Me ind1KG
Version 3.14.0
Since Bioconductor 2.2 (R-2.7)

Package Downloads

Package Source GGBase_3.14.0.tar.gz
Windows Binary (32- & 64-bit)
MacOS 10.5 (Leopard) binary GGBase_3.14.0.tgz
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