Bioconductor version: 2.9
SNP locations and alleles for Homo sapiens extracted from NCBI dbSNP Build 132. The source data files used for this package were created by NCBI on 9 November 2010 and contain SNPs mapped to reference genome GRCh37. WARNING: Note that the GRCh37 genome is the same as the hg19 genome from UCSC except for the mitochondrion chromosome. Therefore, the SNPs in this package can be "injected" in BSgenome.Hsapiens.UCSC.hg19 but this injection will exclude chrM (i.e. nothing will be injected in that sequence).
Author: Herve Pages
Maintainer: H. Pages <hpages at fhcrc.org>
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R") biocLite("SNPlocs.Hsapiens.dbSNP.20101109")
To cite this package in a publication, start R and enter:
citation("SNPlocs.Hsapiens.dbSNP.20101109")
Reference Manual |
biocViews | AnnotationData, Genetics, Homo_sapiens |
Depends | R (>= 2.10), IRanges, GenomicRanges |
Imports | methods, IRanges, GenomicRanges |
Suggests | Biostrings, BSgenome(>= 1.16.1), BSgenome.Hsapiens.UCSC.hg19 |
System Requirements | |
License | Artistic-2.0 |
URL | |
Depends On Me | |
Imports Me | |
Suggests Me | ceu1kg, cheung2010 |
Version | 0.99.6 |
Package Source | SNPlocs.Hsapiens.dbSNP.20101109_0.99.6.tar.gz |
Windows Binary | SNPlocs.Hsapiens.dbSNP.20101109_0.99.6.zip (32- & 64-bit) |
MacOS 10.5 (Leopard) binary | SNPlocs.Hsapiens.dbSNP.20101109_0.99.6.tgz |
Package Downloads Report | Download Stats |
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