cellHTS2

Analysis of cell-based screens - revised version of cellHTS

Bioconductor version: 2.9

Analysis of cell-based RNA interference screens. See ?cellHTS2 for a brief introduction.

Author: Ligia Bras, Wolfgang Huber <whuber at embl.de>, Michael Boutros <m.boutros at dkfz.de>, Gregoire Pau <gpau at embl.de>, Florian Hahne <florian.hahne at novartis.com>

Maintainer: Joseph Barry <joseph.barry at embl.de>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("cellHTS2")

To cite this package in a publication, start R and enter:

    citation("cellHTS2")

Documentation

PDF	R Script	Main vignette (complete version): End-to-end analysis of cell-based screens
PDF	R Script	Main vignette: End-to-end analysis of cell-based screens
PDF	R Script	Supplement: enhancer-suppressor screens
PDF	R Script	Supplement: multi-channel assays
PDF		Reference Manual

Details

biocViews	CellBasedAssays, Preprocessing, Visualization
Depends	RColorBrewer, Biobase, methods, genefilter, splots, vsn, hwriter, locfit, grid
Imports	prada, GSEABase, Category
Suggests
System Requirements
License	Artistic-2.0
URL	http://www.dkfz.de/signaling, http://www.ebi.ac.uk/huber
Depends On Me	coRNAi, HTSanalyzeR, imageHTS
Imports Me	HTSanalyzeR, RNAinteract
Suggests Me
Version	2.18.0
Since	Bioconductor 2.1 (R-2.6)

Package Downloads

Package Source	cellHTS2_2.18.0.tar.gz
Windows Binary	cellHTS2_2.18.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary	cellHTS2_2.18.0.tgz
Package Downloads Report	Download Stats

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