Analysis of cell-based screens - revised version of cellHTS

Bioconductor version: 2.9

Analysis of cell-based RNA interference screens. See ?cellHTS2 for a brief introduction.

Author: Ligia Bras, Wolfgang Huber <whuber at embl.de>, Michael Boutros <m.boutros at dkfz.de>, Gregoire Pau <gpau at embl.de>, Florian Hahne <florian.hahne at novartis.com>

Maintainer: Joseph Barry <joseph.barry at embl.de>

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PDF R Script Main vignette (complete version): End-to-end analysis of cell-based screens
PDF R Script Main vignette: End-to-end analysis of cell-based screens
PDF R Script Supplement: enhancer-suppressor screens
PDF R Script Supplement: multi-channel assays
PDF   Reference Manual


biocViews CellBasedAssays, Preprocessing, Visualization
Depends RColorBrewer, Biobase, methods, genefilter, splots, vsn, hwriter, locfit, grid
Imports prada, GSEABase, Category
System Requirements
License Artistic-2.0
URL http://www.dkfz.de/signaling, http://www.ebi.ac.uk/huber
Depends On Me coRNAi, HTSanalyzeR, imageHTS
Imports Me HTSanalyzeR, RNAinteract
Suggests Me
Version 2.18.0
Since Bioconductor 2.1 (R-2.6)

Package Downloads

Package Source cellHTS2_2.18.0.tar.gz
Windows Binary cellHTS2_2.18.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary cellHTS2_2.18.0.tgz
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