Category

Category Analysis

Bioconductor version: 2.9

A collection of tools for performing category analysis.

Author: R. Gentleman with contributions from S. Falcon and D.Sarkar

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("Category")

To cite this package in a publication, start R and enter:

    citation("Category")

PDF	R Script	Using Categories to Analyze Microarray Data
PDF	R Script	Using Chromosome Bands as Categories
PDF		Reference Manual
Text		NEWS

biocViews	Bioinformatics, Annotation, GO, Pathways
Depends	AnnotationDbi(>= 0.1.15), Biobase(>= 1.15.29)
Imports	graph, methods, Biobase(>= 1.15.29), AnnotationDbi(>= 0.1.15), RBGL, GSEABase, genefilter, annotate(>= 1.15.6), stats, utils
Suggests	EBarrays, ALL, Rgraphviz, RColorBrewer, xtable (>= 1.4-6), hgu95av2.db, Matrix, KEGG.db, GO.db, SNPchip, geneplotter, limma, lattice, graph, Biobase, genefilter, methods
System Requirements
License	Artistic-2.0
URL
Depends On Me	eisa, GOstats, PCpheno
Imports Me	cellHTS2, GOstats, PCpheno, phenoTest, ppiStats
Suggests Me	BiocCaseStudies, cellHTS, GSEAlm, MmPalateMiRNA, qpgraph
Version	2.20.0
Since	Bioconductor 1.6 (R-2.1) or earlier

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