Data analysis for cell-based functional assays

Bioconductor version: 2.9

Tools for analysing and navigating data from high-throughput phenotyping experiments based on cellular assays and fluorescent detection (flow cytometry (FACS), high-content screening microscopy).

Author: Florian Hahne <florian.hahne at>, Wolfgang Huber <huber at>, Markus Ruschhaupt, Joern Toedling <toedling at>

Maintainer: Florian Hahne <florian.hahne at>

To install this package, start R and enter:


To cite this package in a publication, start R and enter:



PDF R Script Combining prada output and cellHTS
PDF R Script Removal of contaminants from FACS data
PDF   Reference Manual


biocViews CellBasedAssays, Visualization
Depends R (>= 2.10.0), Biobase, RColorBrewer, grid, methods, rrcov
Imports Biobase, graphics, grDevices, grid, MASS, methods, RColorBrewer, rrcov, utils
Suggests cellHTS, tcltk
System Requirements
License LGPL
Depends On Me cellHTS, domainsignatures, facsDorit, RNAither
Imports Me cellHTS2
Suggests Me
Version 1.30.0
Since Bioconductor 1.6 (R-2.1) or earlier

Package Downloads

Package Source prada_1.30.0.tar.gz
Windows Binary (32- & 64-bit)
MacOS 10.5 (Leopard) binary prada_1.30.0.tgz
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Fred Hutchinson Cancer Research Center