To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("seqLogo")

In most cases, you don't need to download the package archive at all.

seqLogo

Sequence logos for DNA sequence alignments

Bioconductor version: 2.14

seqLogo takes the position weight matrix of a DNA sequence motif and plots the corresponding sequence logo as introduced by Schneider and Stephens (1990).

Author: Oliver Bembom

Maintainer: Oliver Bembom <oliver.bembom at gmail.com>

Citation (from within R, enter citation("seqLogo")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("seqLogo")

Documentation

To view documentation for the version of this package installed in your system, start R and enter: 

browseVignettes("seqLogo")

 

PDF R Script Sequence logos for DNA sequence alignments
PDF   Reference Manual

Details

biocViews SequenceMatching, Software
Version 1.30.0
In Bioconductor since BioC 2.0 (R-2.5)
License LGPL (>= 2)
Depends methods, grid
Imports
Suggests
System Requirements
URL
Depends On Me motifRG, rGADEM, spliceSites
Imports Me motifRG, PWMEnrich, rGADEM, TFBSTools
Suggests Me BCRANK, MotifDb

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source seqLogo_1.30.0.tar.gz
Windows Binary seqLogo_1.30.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) seqLogo_1.30.0.tgz
Mac OS X 10.9 (Mavericks) seqLogo_1.30.0.tgz
Browse/checkout source (username/password: readonly)
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