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Software package for transcription factor binding site (TFBS) analysis

Bioconductor version: 2.14

TFBSTools is a package for the analysis and manipulation of transcription factor binding sites and transcription factor profile matrices.

Author: Ge Tan <ge.tan09 at>

Maintainer: Ge Tan <ge.tan09 at>

Citation (from within R, enter citation("TFBSTools")):


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PDF R Script TFBSTools
PDF   Reference Manual


biocViews GeneRegulation, MotifAnnotation, MotifDiscovery, Software
Version 1.2.0
In Bioconductor since BioC 2.13 (R-3.0)
License GPL-2
Depends R (>= 3.0.1)
Imports Biostrings(>= 2.29.19), RSQLite (>= 0.11.4), seqLogo, GenomicRanges(>= 1.13.50), caTools (>= 1.14), XVector(>= 0.2.0), rtracklayer(>= 1.22.0), BSgenome(>= 1.30.0), IRanges(>= 1.19.38), methods, gtools (>= 3.0.0), CNEr(>= 0.99.8), BiocParallel(>= 0.5.6), DirichletMultinomial(>= 1.5.1)
Suggests JASPAR2014(>= 0.99.3), RUnit, BiocGenerics
System Requirements meme
Depends On Me
Imports Me
Suggests Me

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Package Source TFBSTools_1.2.0.tar.gz
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Mac OS X 10.6 (Snow Leopard) TFBSTools_1.2.0.tgz
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